YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51893791, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYAARRLLL MLPVLFGVTL LVFLLFYLTP GDPVRAILGQ EAQGLSVEDI ERLRHQLGLD  60
   61 RPWYEQYLSF LGKAVQGDLG RTFRGDRPVA GEIAARFPTT LRLTVISLTV AALVGVPLGV 120
  121 VGAVRRNRWA DHLVMLIALL GVSMPTFWVG IMLMQLFALK LRILPPSGTG TWRHMVLPAA 180
  181 TVALASIAFI ARMTRSSLID ALREDYVRTA RAKGVAERRV VFRHALRNAF IPVLTTLGLE 240
  241 FGSLLGGAVV VESVFSLPGI GRLTVDAIKG RDLPLIQGTI LFVAVVFSLV NLIVDLGYAG 300
  301 LDPRIRYD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.91
Transmembrane Helix	8	29	0.88
Non-Cytoplasmic	30	102	0.97
Transmembrane Helix	103	124	0.92
Cytoplasmic	125	132	0.88
Transmembrane Helix	133	154	0.91
Non-Cytoplasmic	155	173	0.81
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	227	0.95
Transmembrane Helix	228	251	0.86
Non-Cytoplasmic	252	277	0.81
Transmembrane Helix	278	299	0.89
Cytoplasmic	300	308	0.85