YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52787877, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.98
Transmembrane Helix	105	128	0.81
Non-Cytoplasmic	129	142	0.82
Transmembrane Helix	143	163	0.92
Cytoplasmic	164	169	0.81
Transmembrane Helix	170	189	0.92
Non-Cytoplasmic	190	205	0.82
Transmembrane Helix	206	227	0.89
Cytoplasmic	228	241	0.90
Transmembrane Helix	242	264	0.89
Non-Cytoplasmic	265	283	0.65
Transmembrane Helix	284	307	0.84
Cytoplasmic	308	320	0.64
Transmembrane Helix	321	342	0.75
Non-Cytoplasmic	343	350	0.51
Transmembrane Helix	351	372	0.73
Cytoplasmic	373	379	0.71
Transmembrane Helix	380	403	0.86
Non-Cytoplasmic	404	418	0.59
Transmembrane Helix	419	441	0.88
Cytoplasmic	442	619	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVQSMAKEI LARVGGEKNV VSLVHCATRL RFKLKDRSKA DREALENTDG VVTVVESGGQ  60
   61 FQVVIGNNVP EVYKEIGRIS QLLESSAADH SQKEKGSLAG RLVDVVSSIF TPLLGVMAGA 120
  121 GILKGLLLIC TNAGWLSPEE TTYTILYAAA DSLFYFLPLL LAVTAAKKFG ANPFIALTIA 180
  181 GALIYPTILE LKNSGAHTEF FGIPVVLMNY TSTVIPIILA VFVMSYLERL CMRFIHESVK 240
  241 NFITPLLCLT VMVPLTLIVF GPLGVYTGNG IAAAILSVFD FSPILAGAII AALWQILVIF 300
  301 GIHWGIVPVI LNNIAVHGKD YIKPATAAAV FAQTGAAFGV MLKTKNKKLK ALAGSAAVTG 360
  361 IFGITEPAVY GVTLRLKKPF VCGVISAAAG GAIIGYSGSV ALASGAPGLL TIPIFYGPGF 420
  421 LGFIIGISVS FVLSILLTYI VGFDDPVEVT KEEPVEKSAG EPIYSPLQGE VLPLTEVSDK 480
  481 VFASGALGEG IAVVPSKGVV TAPADGIVTT AFPTGHAYGI TTESGAEILI HIGMDTVRLE 540
  541 GKHFNPKAVQ GQNVKRGDIL AEFDLDALKE EGFDVKTPII VTNSGQYTDV IPTDQKKVKT 600
  601 EERIITLISS PREENNHEI