YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52005586, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	53	0.91
Non-Cytoplasmic	54	72	0.93
Transmembrane Helix	73	93	0.91
Cytoplasmic	94	102	0.76
Transmembrane Helix	103	122	0.93
Non-Cytoplasmic	123	142	0.85
Transmembrane Helix	143	167	0.80
Cytoplasmic	168	185	0.90
Transmembrane Helix	186	205	0.93
Non-Cytoplasmic	206	217	0.82
Transmembrane Helix	218	239	0.89
Cytoplasmic	240	245	0.83
Transmembrane Helix	246	269	0.88
Non-Cytoplasmic	270	293	0.91
Transmembrane Helix	294	313	0.97
Cytoplasmic	314	349	0.59
Transmembrane Helix	350	375	0.75
Non-Cytoplasmic	376	400	0.50
Transmembrane Helix	401	422	0.87
Cytoplasmic	423	450	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFNAFLEE KIMPVAGRIA AQRHLQALRD GIILTMPLII IGSLFLILAN LPIPGYPEFM  60
   61 AGIFGDQWAE KLSYPVNVSF DIMALIATFG IAYRLAEKYD IDALSSGAIA VAAFLLATPY 120
  121 QIPFTPEGAT EEILVSGGIP ISLMGSKGLF VGMLIAMFST EVYRWVVQKD IVVKMPDGVP 180
  181 PAVSKSFIAL IPGFAVIGSI WAARLLIEMT PFESLHNVVN VLLGTPLSVL GGSLGGSLIA 240
  241 ETVKMLLWSC GLHGANIVGG VMSPIWYGAM DENRLAFQAG EALPNIFTTQ FFEIWINIGG 300
  301 SGATLALVIT MFLRARSKQM KQLGRLAIGP AVFNINEPII FGMPIVMNPM LLIPFIVSPL 360
  361 LMITATYIGM STGLVAKPAG IAVPWTMPPG FSGYLATGGK ISGAVMQLIN LLISFVVYYP 420
  421 FFRMWDKQKL KEESELETGT AASDGQQVSV