YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52787678, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	49	0.58
Transmembrane Helix	50	73	0.69
Cytoplasmic	74	81	0.40
Transmembrane Helix	82	106	0.85
Non-Cytoplasmic	107	134	0.52
Transmembrane Helix	135	156	0.90
Cytoplasmic	157	163	0.52
Transmembrane Helix	164	184	0.52
Non-Cytoplasmic	185	195	0.89
Transmembrane Helix	196	219	0.88
Cytoplasmic	220	232	0.85
Transmembrane Helix	233	252	0.95
Non-Cytoplasmic	253	295	0.73
Transmembrane Helix	296	330	0.72
Cytoplasmic	331	350	0.75
Transmembrane Helix	351	374	0.90
Non-Cytoplasmic	375	405	0.53
Transmembrane Helix	406	430	0.70
Cytoplasmic	431	448	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLVSSNLV KGKIINISPP QTLALSFLII IAIGACLLKL PGASTTYISW VDALFTATSA  60
   61 TTVTGLVVVD TGADFTVFGQ TVIMCLIQIG GLGLMTFAVL VVMMIGKKIG LQQRILVQEA 120
  121 FNQTSLGGLV RLVKHLFIFT IVIEFVAFLI LSIRWVPEYG LQKGLFHSLF NTISAFNNAG 180
  181 FSLWPDNLSQ YVGDPIVNLV ITGLFITGGI GFTVLLDLWT KRNFRKLSLH SKLMIVGTLI 240
  241 INTTAALLIF ILEYSNPGTL GGLPLADKMW GAYFQGVTPR TAGFNTLDIA QMTTPSLLLI 300
  301 IVLMFIGAGS ASTGSGIKLT TYIVMILATI TFLRGKSETV VFKRAIKMKT ILRALAIIVI 360
  361 SFLFVLFALF ILTITENAPF LKIVFEVFSA FGTVGLSMGL TPDLTAAGKA VIMMMMFIGR 420
  421 VGPLTMAFTL AKPKKAPIRH PEDEVITG