YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52005333, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	33	0.87
Non-Cytoplasmic	34	42	0.87
Transmembrane Helix	43	65	0.88
Cytoplasmic	66	75	0.83
Transmembrane Helix	76	94	0.96
Non-Cytoplasmic	95	100	0.80
Transmembrane Helix	101	122	0.94
Cytoplasmic	123	133	0.86
Transmembrane Helix	134	154	0.91
Non-Cytoplasmic	155	161	0.76
Transmembrane Helix	162	183	0.91
Cytoplasmic	184	236	0.97
Transmembrane Helix	237	261	0.81
Non-Cytoplasmic	262	276	0.90
Transmembrane Helix	277	299	0.92
Cytoplasmic	300	307	0.90
Transmembrane Helix	308	330	0.92
Non-Cytoplasmic	331	336	0.84
Transmembrane Helix	337	359	0.93
Cytoplasmic	360	372	0.73
Transmembrane Helix	373	394	0.86
Non-Cytoplasmic	395	402	0.77
Transmembrane Helix	403	425	0.92
Cytoplasmic	426	477	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKRSNAWL YFFGALGGVL YGYDTGVISG AILFMKDELG LNAFTEGLVV SAILIGAIFG  60
   61 SGLSGRLTDR FGRRRAIMSA AVLYCIGGLG TALAPSTEYM VAFRIVLGLA VGCSTTIVPL 120
  121 YLSELAPKES RGALSSLNQL MITIGILLSY LINYAFSDAG AWRWMLGLAL IPSIGLLIGI 180
  181 FFMPESPRWL LTKGKEEKAR RVLSKMRGGE RVDQEVKEIK EAEKQDQGGL KELLEPWVRP 240
  241 ALIAGVGLAF LQQFIGTNTI IYYAPKTFTN VGFEDSAAIL GTVGIGTVNV LMTLVAIRFI 300
  301 DRIGRKPLLL FGNAGMVISL IVLSFSNLFF GNTSGAAWTT VICLGVFIVV FAVSWGPIVW 360
  361 VMLPELFPLH VRGIGTGVST LMLHAGNLIV TLSFPVLMEA MGISYLFLCY AAIGIAAFLF 420
  421 VFFKVTETKG KVWKRSSRIC GTSTAESRQL THSRLNDRQK DGQGPILFCV KRPADHG