YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52005036, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.92
Transmembrane Helix	29	52	0.92
Non-Cytoplasmic	53	84	0.88
Transmembrane Helix	85	105	0.90
Cytoplasmic	106	114	0.79
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	140	0.72
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	171	0.74
Transmembrane Helix	172	194	0.92
Non-Cytoplasmic	195	213	0.78
Transmembrane Helix	214	239	0.83
Cytoplasmic	240	258	0.75
Transmembrane Helix	259	286	0.85
Non-Cytoplasmic	287	297	0.63
Transmembrane Helix	298	319	0.82
Cytoplasmic	320	326	0.57
Transmembrane Helix	327	347	0.87
Non-Cytoplasmic	348	354	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYKNIHHI NGADGTDEEQ RPISRPLGAV FVLAGGIMLL LFGAALSIAL GAADIKLGTV  60
   61 WDAIFHFDAK NTAHQIIQEL RLPRTVSAAL VGACLAVSGA VMQGMTRNPL ASPEIMSVTH 120
  121 GSAFAIAVAF AFFPGTSSIG LMIWSFAGAA LGAGLVFGIG MFSKGGLTPV KLALAGTAVG 180
  181 TFLSALSTSI AIHFDVARDV SFWYAGGVAG TKWLSIQLLI PAAALGLAVV FVIARSITVL 240
  241 SLGEELAKGL GQYTKTVKAI GIVSVVLLTG ATVSVAGAIG FIGLIIPHIT RFLVGVDYRW 300
  301 IIPCSAVLGA VLLIYADIAA RLVNPPFETP VGAVTALVGV PFFLYLARRE RSGL