YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52005035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	28	0.91
Non-Cytoplasmic	29	63	0.91
Transmembrane Helix	64	84	0.94
Cytoplasmic	85	93	0.84
Transmembrane Helix	94	112	0.98
Non-Cytoplasmic	113	123	0.83
Transmembrane Helix	124	147	0.90
Cytoplasmic	148	155	0.83
Transmembrane Helix	156	176	0.94
Non-Cytoplasmic	177	196	0.91
Transmembrane Helix	197	218	0.91
Cytoplasmic	219	246	0.93
Transmembrane Helix	247	271	0.84
Non-Cytoplasmic	272	285	0.75
Transmembrane Helix	286	305	0.92
Cytoplasmic	306	314	0.68
Transmembrane Helix	315	334	0.91
Non-Cytoplasmic	335	337	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKNNRRAG AVMLVMAVLT AAVFLLSMNM GEIRIDPLAT LRTLFGFGTP QDELVLFEFR  60
   61 LPRMILAMLI GAGVAVSGAV WQGISRNDLA DPGILGINTG AGFAVVLFIF YFQGDVGNLQ 120
  121 KGFVFSLPIF AFLGACFAVV SIYLLAWKKG LNPIRLVLVG IGVNAAFSAA ILMLQLKMDP 180
  181 NDFMQAAVWL SGNIWSSNWS FVSAVLPWIV VLIPFILYKA RYLNVLNLGD QLATGLGTAV 240
  241 EKERRTLLLS AAALSGACVA AGGNITFLGL VAPHIARRLV GPKHQLLIPA SALTGALLFL 300
  301 LADLIGRMIL APSEIPVGLV IAALGAPYFI YLLMKTN