YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52081757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHSHGHTGH SHHGSRSANQ KALFISFGLI FTFMMIEVIG GILTNSLALL SDAGHMLSDA  60
   61 AALGFSLLAF KIGEKAASAS KTFGYRRFEI LAAFINGITL LLISLYIFWE AYNRFFSPPE 120
  121 VAGRGMLAIA TVGLFVNIAA AWVIMKGDTS GNLNMRSAFL HIIGDMLGSF GAIIAGLLML 180
  181 FFNWNIADPI ASAVVAALVL VSGWRVTKDS VHILMEGKPK DIDAEALKNG LLSIPSVREV 240
  241 HDLHIWSISS DMPSLSCHIV ADENSDRDRI LKQVSKYLRK ECNVEHVTVQ IEGERCSPHE 300
  301 SCSLGANHPR S

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	52	0.75
Transmembrane Helix	53	73	0.89
Cytoplasmic	74	89	0.89
Transmembrane Helix	90	109	0.95
Non-Cytoplasmic	110	124	0.85
Transmembrane Helix	125	145	0.94
Cytoplasmic	146	157	0.93
Transmembrane Helix	158	181	0.90
Non-Cytoplasmic	182	185	0.84
Transmembrane Helix	186	207	0.87
Cytoplasmic	208	311	0.98