YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GCSPA_BACLD
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHRYLPATD QDKKEMLEAI GVERIDELFS DIPESVRFKG EYQIKKAKSE TELTKELTKL  60
   61 AAKNKDTVTY ASFLGAGVYD HYQPVIVDHV ISRSEFYTAY TPYQPEISQG ELQAIFEFQT 120
  121 MICELTGMDI SNSSMYDGGT ALAEAAMLAS GHTKKKKIVV SETVHPESRE VLKTYAKGQY 180
  181 IDVVEVPSKN GTADLEALDE AVCEDTAAVI VQYPNFFGRI EPLKDIKPIA HKGKSMFIVS 240
  241 ANPLALGLLT PPGALGADIV VGDAQPFGIP AAFGGPHCGF FAVTKKLMRK VPGRLVGQTE 300
  301 DENGKRGFVL TLQAREQHIR RDKATSNICS NQALNALAAS VAMTALGKKG VKEIAWQNLQ 360
  361 KAAYAKEAAK RAGLEVAFEG PMFNEFVIRL NEPVEKANER LLEKNIIGGY DLGASYPDLK 420
  421 RHMLIAVTEL RTKEEIDTLM NELGDCHE

Type	Start	End	Confidence
Cytoplasmic	1	235	0.53
Transmembrane Helix	236	255	0.50
Non-Cytoplasmic	256	266	0.82
Transmembrane Helix	267	284	0.50
Cytoplasmic	285	448	0.51