YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52786203, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNIIWVGLT VIGLVFALFN GTVQEVNEAV FKGSKEAVTI VIGLMSVLVF WLGLMKIAEQ  60
   61 SGLLEKFSRL CRPFISKLFP EIPPDHPAMG YILSNLMANF FGLGNAATPL GIKAMEQMKA 120
  121 LNRNRREASR SMITFLAVNT SSITLIPTTV IAVRMTYDAK APTDIVGPTI LATLISGIFA 180
  181 IFIDRYFYYR RKKKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.83
Transmembrane Helix	5	23	0.91
Cytoplasmic	24	36	0.82
Transmembrane Helix	37	55	0.95
Non-Cytoplasmic	56	88	0.93
Transmembrane Helix	89	112	0.87
Cytoplasmic	113	131	0.94
Transmembrane Helix	132	153	0.94
Non-Cytoplasmic	154	164	0.86
Transmembrane Helix	165	188	0.87
Cytoplasmic	189	195	0.96