YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52786133, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKGMKFV GDSRIPAERK PNIPKDYSEF PGKTEAFWPN FLLKEWMVGA VFLVGFLVLT  60
   61 IVHEPPLERM ADPTDTGYIP LPDWYFLFLY QLLKYEYAAG PYTVVGAIII PTIAFGALLL 120
  121 APFLDRGPER RPFKRPVAVG LMLLAISATV FLTWQSVVTH DWAAAEEQGK IKEEADIDTS 180
  181 AEGYKIYQEQ GCISCHGDNM QGGAAGPSLV DNGLSPEEIA KIAKEGKGEM PAGVFKGSDK 240
  241 ELKELSKFIS ETTAK

Type	Start	End	Confidence
Cytoplasmic	1	41	0.94
Transmembrane Helix	42	63	0.88
Non-Cytoplasmic	64	98	0.91
Transmembrane Helix	99	124	0.85
Cytoplasmic	125	135	0.87
Transmembrane Helix	136	154	0.92
Non-Cytoplasmic	155	255	0.94