YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52786002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.96
Transmembrane Helix	10	29	0.93
Non-Cytoplasmic	30	35	0.76
Transmembrane Helix	36	57	0.92
Cytoplasmic	58	67	0.92
Transmembrane Helix	68	90	0.91
Non-Cytoplasmic	91	97	0.76
Transmembrane Helix	98	119	0.93
Cytoplasmic	120	128	0.73
Transmembrane Helix	129	150	0.92
Non-Cytoplasmic	151	161	0.84
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	191	0.93
Transmembrane Helix	192	213	0.92
Non-Cytoplasmic	214	221	0.84
Transmembrane Helix	222	244	0.92
Cytoplasmic	245	264	0.79
Transmembrane Helix	265	292	0.64
Non-Cytoplasmic	293	326	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLIKISQF AGKTFAIWVI LFAILGFAFP SQFTWIVPYI TILLGVIMFG MGLTLSADDF  60
   61 KELLRRPLHV LIGVLIQYTV MPLLAFGLAY GLALPPEIAV GVILVGCCPG GTASNVMTFL 120
  121 AKGNIALSVA ITTLSTLLAP FLTPFLILFF AKEWLPVSPG SLFVSILQAV LLPIIAGLIV 180
  181 QFFFKKQVKK AVQVLPLVSV LGIVAIVSAV VGGNRENIIQ SGLLIFAVVV LHNGLGLFLG 240
  241 FVLAKCFKMD YASQKAVSIE VGMQNSGLGA ALATAHFSPL SAVPSAVFSV WHNLSGSWLA 300
  301 TYWAKKTNKQ KNDNHSPAPQ MINKKL