YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52003716, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKHIVILGA GYGGLLSALT VRKHYTKEEA KVTVVNQYPT HQIITELHRL AAGNVSEQAV  60
   61 AMPLAKLFKG KDIDLKIAKV NSFSVDKKEV ALSDGSTLTY DALVVGLGSV TAYFGIPGLE 120
  121 ENSMVLKSAN DANKIFKHVE ERVREYAKTK NEADATILIG GGGLTGVELV GELADIMPSL 180
  181 ARSYGVDPTE IKLKLVEAGP KILPVLPDEL IERATKSLEK RGVEFLTGLP VTNVEGNVVD 240
  241 LKDGQKIVTN TFVWTGGVQG NPLIGESGLE VNRGRATVND FLQSTSHEDV FVAGDSAVVF 300
  301 GPDGRPYPPT AQIAWQMGEL IGYNLYAYLE NKSMATFSPV NSGTLASLGR KDAVAVIGAN 360
  361 STSLKGLPAS LMKEASNVRY LSHIKGLFSL AY

Type	Start	End	Confidence
Signal Peptide	1	20	0.71
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	392	0.99