YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52785674, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLPNKITL SRIALIPVFM VIMLVPFQWG AVSFGSESIP VTHLIGALLF IFASVTDWVD  60
   61 GYYARKLNLV TNFGKFLDPL ADKLLVSSAL IILVHYHLAP AWMAIVIISR EFAVTGLRLV 120
  121 LAGTGEVVAA NMLGKVKTWA QIIAISALLL HNLPFELVSF PFGSLALWVA VFFTVVSGWD 180
  181 YFAKNWDALK TSN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	32	0.89
Non-Cytoplasmic	33	38	0.91
Transmembrane Helix	39	59	0.90
Cytoplasmic	60	79	0.84
Transmembrane Helix	80	99	0.83
Non-Cytoplasmic	100	111	0.54
Transmembrane Helix	112	130	0.61
Cytoplasmic	131	137	0.45
Transmembrane Helix	138	155	0.56
Non-Cytoplasmic	156	159	0.51
Transmembrane Helix	160	183	0.81
Cytoplasmic	184	193	0.68