YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52348010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIYLDAIWL LNFCFDLLLL MMTAFILKRR VKKRRLILGA FVASSIVLFM FTPFSPYVLH  60
   61 PAGKLSFSVV IVLVAFGFKR FRFFLQNLFS FYFATFLMGG GIIGAHSLLE TDSIMENGVF 120
  121 MTNWSGFGDP VSWLFVCVGF AAVWLFSKKR FEDAEAKKIQ YEERVRLEAC IGEHTLHFTG 180
  181 LIDSGNQLYD PITKTPVMIV NIEKLKVVLG EEASVTIKEM SPLDAVGKLD EALPYIGRIR 240
  241 LIPYRGVGHQ HQFLLCLKPD HVLVCTEREV IEAPKCLIGI STSPLSADGE FDAIVHPKML 300
  301 AGNPVKHVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	27	0.95
Cytoplasmic	28	35	0.90
Transmembrane Helix	36	54	0.96
Non-Cytoplasmic	55	61	0.68
Transmembrane Helix	62	78	0.96
Cytoplasmic	79	87	0.75
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	126	0.94
Transmembrane Helix	127	147	0.91
Cytoplasmic	148	309	0.99