YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52785495, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.95
Cytoplasmic	44	63	0.87
Transmembrane Helix	64	85	0.89
Non-Cytoplasmic	86	93	0.71
Transmembrane Helix	94	112	0.92
Cytoplasmic	113	131	0.82
Transmembrane Helix	132	150	0.92
Non-Cytoplasmic	151	165	0.89
Transmembrane Helix	166	185	0.92
Cytoplasmic	186	192	0.72
Transmembrane Helix	193	211	0.95
Non-Cytoplasmic	212	217	0.83
Transmembrane Helix	218	236	0.96
Cytoplasmic	237	242	0.77
Transmembrane Helix	243	262	0.90
Non-Cytoplasmic	263	268	0.67
Transmembrane Helix	269	290	0.91
Cytoplasmic	291	314	0.85
Transmembrane Helix	315	335	0.92
Non-Cytoplasmic	336	339	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMLLLISCG KERRTMLEQV ILFTIIMGFL ISVLLSPIFI PFLRRLKFGQ SIREEGPKSH  60
   61 QKKSGTPTMG GVMIILSIIA TTIVMTMKFS EVSMNMILLL FVTVGYGLLG FLDDYIKVVM 120
  121 KRNLGLTSKQ KLIGQIVIAL VFYAVYHFQG MPTDIRIPGT ELSFDFGWIY PVLVIFMLVG 180
  181 GSNAVNLTDG LDGLLSGTAA IAFGAFAILA WNQSQYDVAI FAVAVVGAVL GFLVFNAHPA 240
  241 KVFMGDTGSL ALGGAIVTIA ILTKLEILLV IIGGVFVIET LSVILQVISF KTTGKRIFKM 300
  301 SPLHHHYELV GWSEWRVVVT FWTAGLLLAV LGIYIEVWL