YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52785361, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.73
Transmembrane Helix	12	35	0.85
Non-Cytoplasmic	36	66	0.59
Transmembrane Helix	67	101	0.75
Cytoplasmic	102	135	0.53
Transmembrane Helix	136	160	0.88
Non-Cytoplasmic	161	179	0.67
Transmembrane Helix	180	200	0.96
Cytoplasmic	201	219	0.57
Transmembrane Helix	220	242	0.76
Non-Cytoplasmic	243	284	0.80
Transmembrane Helix	285	304	0.82
Cytoplasmic	305	312	0.82
Transmembrane Helix	313	331	0.92
Non-Cytoplasmic	332	337	0.72
Transmembrane Helix	338	357	0.92
Cytoplasmic	358	362	0.69
Transmembrane Helix	363	382	0.81
Non-Cytoplasmic	383	388	0.69
Transmembrane Helix	389	408	0.95
Cytoplasmic	409	698	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSLFGVLQ KIGRALMLPV AILPAAGILL ALGNAMQNPQ MTKVAPFLTN STVQLVAKVM  60
   61 ESSGDVVFTN LALLFAVGVA IGLANGDGVA GIAAIIGYLV MNVTMSAVLL QNGSIPSDAV 120
  121 ERAQFFTQNH PEYTTMLGIP TLATGVFGGI IVGVLAAAMY NRFYTIELPQ YLGFFAGKRF 180
  181 VPIITSICAL LLGLVMLFIW PPIQGALNSF STNLLAANEA VAALIFGMIE RALIPFGLHH 240
  241 IFYSPFWYEF FSYTNQAGEI VRGDQRIFMA QIKDGVELTA GTFMTGKYPF MMFGLPAAAL 300
  301 AIYHEAKPQN KKLVAGIMGS AALTSFLTGI TEPIEFSFLF VAPILFAIHC VFAGLSFMMM 360
  361 DILNVKIGMT FSGGLIDYFL FGILPNRTAW WLVIPVGLVL AVIYYFGFRF AIRKFNLKTP 420
  421 GREDAAAEPA DEGKEAAGDL PYQILEAMGD QENIKHLDAC ITRLRVTVND QKKVDKERLK 480
  481 KLGASGVLEV GNNIQAIFGP RSDNLKSQMQ DIMSGRTPRP EKAPNAAEEV EQQIEEAMVE 540
  541 PLQNESGEEV FVSPLAGELH PIADVPDQVF SGKMMGDGFA ILPAEGTVVS PVRGKVLNVF 600
  601 PTKHAIGLQS DGGREILIHF GIDTVSLKGE GFTSFVSEGD RVEPGQKLLE VDIEKVKDNV 660
  661 PSLMTPIVFT NLQEGESVSL QAEGNVSLTQ DDIVRIEK