YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52079642, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKYLGRRLV YMLISLWVIV TATFFLMRAI PGGPFSGERK LPPAIEASLN SYYGLDQPLF  60
   61 KQYLDYLVSV AKWDFGPSFK YKGQTVNDLI SSGFPISFTL GLEAICLALA FGVLFGVIAA 120
  121 LKRNKWQDYT AMIIAVVGIS VPNFIMAALL QYVLAMKLGM FPVAQWESWG HTVLPAIAVA 180
  181 SMPMAFIARL TRSSMLEVLS SDYIRTARAK GLSTSAVTFK HAIRNAIMPV VTYMGPMAAS 240
  241 ILTGTFVVEK VFGIPGLGMH FVTSITNRDY TVIMGVTVFF GAILLLCVLI VDLLYGLIDP 300
  301 RIKLFGAKKG E

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	98	0.97
Transmembrane Helix	99	121	0.91
Cytoplasmic	122	128	0.95
Transmembrane Helix	129	152	0.89
Non-Cytoplasmic	153	168	0.89
Transmembrane Helix	169	190	0.90
Cytoplasmic	191	229	0.94
Transmembrane Helix	230	252	0.85
Non-Cytoplasmic	253	272	0.87
Transmembrane Helix	273	296	0.90
Cytoplasmic	297	311	0.92