YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52002847, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYIIRRTL MSIPILFGIT ILSFAIMKAA PGDPMALMMD PTISAGDREK FIEKYGLDEP  60
   61 EHVQYLKWLG NMVQGDFGTS IVRKGTPVTD LIMARLPNTL LLMLVSTILA LLISIPLGVL 120
  121 SARRPYSKLD YGITFTSFIG LAVPNFWLGL ILIMFLAVNL GWFPTGGVMT LNADFSLWDR 180
  181 IHHLILPAFV LATADMAGLT RYTRSSMLDV LRQDYMRTAR AKGFKENRVV YKHGLRNGLL 240
  241 PVITIFGLMI PSFIGGAVVT EQIFSWPGLG KLFVDSAFQR DYPVIMAMTV ISATLVVIGN 300
  301 LVADILYAMV DPRIEY

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	99	0.97
Transmembrane Helix	100	120	0.95
Cytoplasmic	121	134	0.83
Transmembrane Helix	135	160	0.84
Non-Cytoplasmic	161	180	0.89
Transmembrane Helix	181	202	0.89
Cytoplasmic	203	237	0.96
Transmembrane Helix	238	260	0.90
Non-Cytoplasmic	261	283	0.91
Transmembrane Helix	284	307	0.89
Cytoplasmic	308	316	0.90