YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52079631, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKRVVITG LGALSPLGND VKTSWNNAIN GVSGVGPITR VNADEYPAKV AAELKDFKIE  60
   61 DYMDKKEARK MDRFTQYAVV SAKMAVEDAG LDINESNADR IGVWVGSGIG GLETLEQQFE 120
  121 TFLTKGPRRV SPFFVPMMIP DMATGQISIS LGAKGVNSCT VTACATGTNS IGDAFKVIQR 180
  181 GDADVMISGG TEAPLTRMSF AGFSANKALS TNPDPKTASR PFDKNRDGFV MGEGAGIVVL 240
  241 EELEHALNRG ATIYAEVVGY GSTGDAYHIT APAPNGEGGV RAMKEAIKDA GLSPVDIDYI 300
  301 NAHGTSTPYN DKFETIAIKE VFGEHAYKLA VSSTKSMTGH LLGAAGGIEA IFSVLAIKEG 360
  361 IIPPTINIET PDEDCDLDYV PDQARRQDVN VVLSNSLGFG GHNATLIFKK YE

Type	Start	End	Confidence
Signal Peptide	1	18	0.59
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	412	0.97