YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52347360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.87
Transmembrane Helix	27	46	0.90
Non-Cytoplasmic	47	56	0.81
Transmembrane Helix	57	79	0.90
Cytoplasmic	80	101	0.89
Transmembrane Helix	102	125	0.87
Non-Cytoplasmic	126	131	0.78
Transmembrane Helix	132	151	0.89
Cytoplasmic	152	169	0.80
Transmembrane Helix	170	185	0.85
Non-Cytoplasmic	186	189	0.79
Transmembrane Helix	190	209	0.91
Cytoplasmic	210	282	0.98
Transmembrane Helix	283	303	0.91
Non-Cytoplasmic	304	308	0.79
Transmembrane Helix	309	330	0.92
Cytoplasmic	331	349	0.94
Transmembrane Helix	350	371	0.93
Non-Cytoplasmic	372	377	0.75
Transmembrane Helix	378	397	0.96
Cytoplasmic	398	407	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSILGIWKT RIEEYVKETR SYLKYMLNDH LVIVMIFFLA GAASWYSKWL KEMPEGFPAY  60
   61 WVMAVIFSLI LTGSYVRTLI KEADLVFLLP LEAKMGPYFQ QAFRFSFLTQ LFPLAAAALA 120
  121 LAPLYFEASG KGFSAYLVLL IQLLVLKGWN TAMQWRMTFF GEKNMRVTDR FVRLLLNTIG 180
  181 IYFALESSYA FAAAVYLIMA ALYVYFKVID KKKSFKWELH IEDEIRRKQR FYRIANLFTD 240
  241 VPHLRKQAKR RAYLDWMLRF IPYEQSRTFT YMYGRAFIRS NDYFGIVVRL TVIFGIIIAY 300
  301 FSAYEWVSAA LIVFTVFITG IQLTPLFDHF SHLPLQELYP VKAEEKRKSF FGLLHIVLSV 360
  361 QALVLSAAAG AMMQWTGMLA GLAGSALLIF VILKPYFSSR LKKSAKR