YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52784410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.81
Transmembrane Helix	14	32	0.87
Non-Cytoplasmic	33	38	0.77
Transmembrane Helix	39	62	0.85
Cytoplasmic	63	78	0.82
Transmembrane Helix	79	98	0.94
Non-Cytoplasmic	99	150	0.86
Transmembrane Helix	151	166	0.92
Cytoplasmic	167	171	0.93
Transmembrane Helix	172	193	0.91
Non-Cytoplasmic	194	205	0.82
Transmembrane Helix	206	223	0.92
Cytoplasmic	224	237	0.83
Transmembrane Helix	238	257	0.93
Non-Cytoplasmic	258	266	0.72
Transmembrane Helix	267	289	0.86
Cytoplasmic	290	305	0.78
Transmembrane Helix	306	324	0.78
Non-Cytoplasmic	325	332	0.60
Transmembrane Helix	333	352	0.77
Cytoplasmic	353	384	0.91
Transmembrane Helix	385	405	0.92
Non-Cytoplasmic	406	626	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDQTQQHRY IPGLDGLRAF AVLAVIAYHL NMSWADGGFI GVDIFFVLSG YLITSIILPA  60
   61 YGNDISLTFR DFWVRRIRRL LPAATLMIFA TVIWVALFNR ELMHTVRGDA ISSLLYVSNW 120
  121 WFIFHDLSYF DSFGSPSPLK NLWSLAIEEQ FYFIWPIILL LGIYIFKKRE RFAAAVVLCA 180
  181 LCSAIWMSIL YVPGGDPSRV YYGTDTRAFE LLIGCALALV WPMKRLSGNR LPNSLKHALH 240
  241 GTELAAFALL MMCIYFVDEF SPFLYHGGML IISIIAAILI ACVSHPSSFL GFALSVKPLR 300
  301 WIGKRSYGIY LWHYPVIVLS TPVQEIGNPV YWHVAMKVAV TFILAELSYR FIEKPIRKDG 360
  361 FKPFVSRVFL DKITEWKTAS VPSKISIGLM FAALLVFAGG LSGLADEKKQ PQQAYSKSYE 420
  421 ETSASADQPA DKSEERQDDK KAQTESGNES KTGNGEESSD TKDEQSAEKE PDRIEKEVLA 480
  481 VGDSVMLDIA SSLRRKIPGI TIDGQVGRQV REALQLTSTY ASFNHPDKAV VIELGTNGYF 540
  541 TDGQLDALLD AFSKADVYLV NTRVPRQWES KVNESLRKHA DSRQNVTLVD WHAEALQHPE 600
  601 YFTADGVHLM PKGAEALASL IVKAMK