YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52346638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGYYVKAEN LKFKRTFSRK MIFIVPLINI CFAFLMNPGF FVAGTYNWWS VILMPVMIAL  60
   61 LCAQSHQKEK KASNYNGIFS SPVDLHQIWY AKISVIALYS LASQAVFLGF MVGMQFVIPQ 120
  121 FSSIHLTVIA ANLLLWLTTL WEIPVCLWIA RKYGFISAVL FNMLGTIILG IMSASSPFWW 180
  181 LNPWSWPIRV MCPTIGIHPN GVPLENGDPL TSWAVVPPAV VLSVLLFAIL ARLTRRSFSP 240
  241 AVDRKSIKRE AV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	47	0.67
Transmembrane Helix	48	67	0.89
Cytoplasmic	68	87	0.98
Transmembrane Helix	88	112	0.81
Non-Cytoplasmic	113	123	0.64
Transmembrane Helix	124	145	0.84
Cytoplasmic	146	157	0.69
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	209	0.95
Transmembrane Helix	210	234	0.85
Cytoplasmic	235	252	0.98