YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52346505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDNIIIGKY VPGKSVIHRL DPRTKLLTIF LFVFIVFFAN NTETYALLGL FTVAAAALSG  60
   61 VPVRFLIKGM KPVFWIVLFT FLLHIFMTRE GPVLADLGLF KIYEQGLVQG IFISLRFVYL 120
  121 IMITTILTLT TTPIEVTDGL EHLLGPFKKL KLPVHELALM MSISLRFIPT LIEETDKIMK 180
  181 AQMARGVDFA NGPVKERVKA IVPLLVPLFV SAFKRAEELA TAMEARGYRG GEGRTKYRQL 240
  241 TWKWKDTSVL LILAVLGVLL ILLRT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	45	0.76
Transmembrane Helix	46	66	0.92
Cytoplasmic	67	72	0.82
Transmembrane Helix	73	91	0.88
Non-Cytoplasmic	92	109	0.77
Transmembrane Helix	110	130	0.83
Cytoplasmic	131	243	0.92
Transmembrane Helix	244	263	0.92
Non-Cytoplasmic	264	265	0.82