YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52081504, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	25	0.97
Non-Cytoplasmic	26	43	0.95
Transmembrane Helix	44	65	0.93
Cytoplasmic	66	83	0.90
Transmembrane Helix	84	105	0.93
Non-Cytoplasmic	106	137	0.93
Transmembrane Helix	138	157	0.94
Cytoplasmic	158	184	0.95
Transmembrane Helix	185	206	0.90
Non-Cytoplasmic	207	223	0.84
Transmembrane Helix	224	245	0.91
Cytoplasmic	246	254	0.85
Transmembrane Helix	255	276	0.91
Non-Cytoplasmic	277	313	0.94
Transmembrane Helix	314	333	0.93
Cytoplasmic	334	341	0.88
Transmembrane Helix	342	364	0.90
Non-Cytoplasmic	365	393	0.94
Transmembrane Helix	394	414	0.94
Cytoplasmic	415	435	0.83
Transmembrane Helix	436	457	0.89
Non-Cytoplasmic	458	463	0.79
Transmembrane Helix	464	483	0.95
Cytoplasmic	484	510	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNISSVFWI VIVITAAAVL WGIVAPDNLQ ALTTSIQGYV TNTLGWYYLL VVSLFVAFSI  60
   61 FLIFSPIGKI RLGKPEEKPE FSRLSWFAML FSAGMGIGLV FYGAAEPISH YAISSPSGET 120
  121 ETAQAFRDSL RYTFFHWGLH AWAIYAIVAL CIAYFQFRKD APGLISATLF PVFGDRVNGP 180
  181 LGKGIDCIAV FATVVGVATS LGIGATQING GLHYLFGVPN SFQVQLAIIA VITVLFLISA 240
  241 WSGIGKGIKY LSNTNMVLAG VLMIFMLFVG PTVLIMNSFT DTIGTYISNV VQMSFRLAPN 300
  301 DPDSREWINS WTIFYWAWWI SWSPFVGIFI ARVSRGRTIR EFLIAVLFAP TVLAFLWFSI 360
  361 FGVSAMDLQQ KGIFNVAKLS TDTMLFGMFD HYPLAMITSI VALLLIAVFF ITSADSATFV 420
  421 LGMQTTYGSL NPENSVKISW GIIQSAMAGA LLYSGGLSAL QNTAILAALP FSVVVILMIV 480
  481 SLYKSLSQER KEIKQAEKFQ KPRSPRVKKA