YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52081420, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKMKRIGVL TSGGDSPGMN AAVRAVVRKA IYHDVEVYGI YNGYSGLISG KIEKLEIGSV  60
   61 GDIIHRGGTK LYTARCPEFK TVEGREKGIA NLKKYGIEGL VVIGGDGSYM GAKKLTEHGF 120
  121 PCVGVPGTID NDIPGTDLTI GFDTALNTVI DAIDKIRDTA TSHERTYVIE VMGRHAGDIA 180
  181 LWSGLAGGAE SILIPEADYD MEEIIARLKR GHERGKKHSI IIVAEGVGSG VEFGKRIEEA 240
  241 TNLETRVSVL GHIQRGGSPT AADRVLASRL GAFAVELLLE GKGGRCVGIQ NNQLVHHDII 300
  301 EILEQKHTID QSMYRLSQEL SI

Type	Start	End	Confidence
Signal Peptide	1	21	0.67
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	322	0.99