YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAP2_YERPS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.75
Transmembrane Helix	6	26	0.86
Cytoplasmic	27	31	0.72
Transmembrane Helix	32	52	0.87
Non-Cytoplasmic	53	58	0.73
Transmembrane Helix	59	78	0.91
Cytoplasmic	79	88	0.83
Transmembrane Helix	89	113	0.88
Non-Cytoplasmic	114	121	0.72
Transmembrane Helix	122	143	0.89
Cytoplasmic	144	163	0.83
Transmembrane Helix	164	183	0.89
Non-Cytoplasmic	184	190	0.64
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	220	0.75
Transmembrane Helix	221	240	0.88
Non-Cytoplasmic	241	245	0.60
Transmembrane Helix	246	261	0.89
Cytoplasmic	262	272	0.71
Transmembrane Helix	273	290	0.92
Non-Cytoplasmic	291	297	0.73
Transmembrane Helix	298	323	0.80
Cytoplasmic	324	333	0.88
Transmembrane Helix	334	356	0.89
Non-Cytoplasmic	357	362	0.80
Transmembrane Helix	363	385	0.88
Cytoplasmic	386	575	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAITINSLF LVGAVLVAAS ILLSSFSSRL GIPILVIFLA IGMLAGTDGL GGIAFDNYPA  60
   61 AYLVSNLALA VILLDGGMRT RASSFRVALW PALSLATFGV IITAGLTGLV AAWLFNLDII 120
  121 QGLLIGAIIG STDAAAVFSL LGGKGLNERV SATLEIESGS NDPMAVFLTV TLIAMIAAGE 180
  181 TSLSWMFLVH LIQQFGLGII IGLLGGGLLL LLINRMELAN GLYPLLAVSG GILVFALATA 240
  241 LNGSGILAVY LCGLLLGNRP IRNRAGILQT FDGLAWLSQI GMFLVLGLLL NPSDLLPIAI 300
  301 PALLLSLWMI LFARPLSVFI GLLPFRSFNL RERVFISWVG LRGAVPVILA VFPMMAGLPN 360
  361 ANLFFNVAFF VVLVSLLLQG TTLSFAARKA KLVVPPTLAP VSRIGLDIDM NNQWEQFIYQ 420
  421 LSCDKWCIGA TLRDLKMPQG TRIAALFRGK DLLHPTGSTR LKEGDILCVI GQEHDLPALG 480
  481 KLFSQSPNIQ LDERFFGDFI LDADAKLQDI SQIYGLNLEP TVDKQQTLGQ FVLYLFGGEP 540
  541 VIGDQIEWDG LTWTIAEMES DRVSRVGVKI VTDKA