YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170024796, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMIKTRAAV AWGPNQPLSV EEVDLMPPQK GEVLVRIVAS GVCHTDAYTL SGADPEGVFP  60
   61 TILGHEGGGI VEAIGEGVTS VAVGDHVIPL YTPECGECKY CRSGKTNLCQ AIRSTQGKGL 120
  121 MPDGTTRFSK NGQPIFHYMG TSTFSELTVV PEISLAKINK EAPLEEVCLL GCGVTTGMGA 180
  181 VMNTAKVKPG DTVAIFGLGG IGLSAVIGAQ MAGASRIIGI DLNTSKFELA RKLGATDLIN 240
  241 PKDYDKPIQE VIVELTDGGV DFSFECIGNV NVMRSALECC HKGWGESVII GVAGAGEEIS 300
  301 TRPFQLVTGR VWRGSAFGGV KGRSELPGIV QQYLDGKFAL NDFITHTMAL DQINEAFDLM 360
  361 HEGKSIRSVI HFNHSSESK

Type	Start	End	Confidence
Cytoplasmic	1	191	0.56
Transmembrane Helix	192	214	0.61
Non-Cytoplasmic	215	379	0.63