YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153950685, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKQARNNL DNPMPNNYDF SNVSSSRNEI DLFEIFGVVF KSKFKIILIT LFFLISGLVV  60
   61 SYILPQKWTS TAIIALPGDE QVQVLDELIT NLTVLDIKVD VSANYLLSTF KQNFDSQDLR 120
  121 EQYLVNTNYF KRLMKNNPED GLDKRALIER IVNENISSVN PLKDKTEGEN EYRYYKLSYS 180
  181 ASTPTDARDL LQGSINYVNT IVNADVFRKI QRAVDLAKGI GTDKYSMELL KARNNQKVKI 240
  241 ERLRYASSIA DAAGVKKPVY SNGSAISDDP DFPITMGSDA LNRKLEIEKS VIDLASINTE 300
  301 LLNRKLYLDK LNRLEIPNVN IVPFKYLQQP TEPTKRDAPK RALIVILFAL VGLMGSVGFV 360
  361 LVEHFVRERK REEEGLKLSQ TKE

Type	Start	End	Confidence
Cytoplasmic	1	43	0.83
Transmembrane Helix	44	64	0.89
Non-Cytoplasmic	65	341	0.86
Transmembrane Helix	342	362	0.93
Cytoplasmic	363	383	0.78