YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_YERPS
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.84
Transmembrane Helix	9	30	0.80
Non-Cytoplasmic	31	47	0.91
Transmembrane Helix	48	71	0.87
Cytoplasmic	72	97	0.93
Transmembrane Helix	98	120	0.85
Non-Cytoplasmic	121	137	0.80
Transmembrane Helix	138	157	0.94
Cytoplasmic	158	167	0.83
Transmembrane Helix	168	190	0.90
Non-Cytoplasmic	191	211	0.93
Transmembrane Helix	212	233	0.91
Cytoplasmic	234	244	0.80
Transmembrane Helix	245	266	0.88
Non-Cytoplasmic	267	284	0.95
Transmembrane Helix	285	309	0.90
Cytoplasmic	310	334	0.90
Transmembrane Helix	335	357	0.91
Non-Cytoplasmic	358	362	0.95
Transmembrane Helix	363	385	0.93
Cytoplasmic	386	394	0.73
Transmembrane Helix	395	414	0.92
Non-Cytoplasmic	415	421	0.76
Transmembrane Helix	422	440	0.97
Cytoplasmic	441	622	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEHKQSLS AVTLAAIGVV YGDIGTSPLY TLRECFSGHY GFDVRPDVVF GFLSLIFWML  60
   61 ILVVSVKYLT YVMRADNAGE GGILTLMSLA GRNTSSRATS ILVVLGLIGG SFFYGEVVIT 120
  121 PAISVMSAIE GLEIAAPALD PYIVPCSIAV LTLLFVIQKH GTGSVGKLFA PVMLVWFLTL 180
  181 ALLGLRSIIA NPEVLAALNP KWAISFFVEY KSVSFFALGA VVLAITGVEA LYADMGHFGK 240
  241 FPIRLAWFTV VLPSLVLNYF GQGALLLKNP EAIKNPFFLL APDWALIPLL ILATLATVIA 300
  301 SQAVISGVFS LTRQAVRLGY LPPMRIIHTS EMESGQIYIP VINWTLYLAV VLVIIGFERS 360
  361 SNLAAAYGIA VTGTMVITSI LFCTVAWKNW HWNRFLVAFL LMVLLIIDIP MFSANVLKLF 420
  421 SGGWLPLSLG LVMFIIMTTW KSERFSLLRR MHEHSNSLEA MIASLEKSPP VRVPGTAVYM 480
  481 SRAMNVIPFA LLHNLKHNKV LHERVVLLTM RTDDVPYVHN VERVTIEQLS PTFWRVVARY 540
  541 GWRETPNVAE IFHRCGLEGL SCQMMETSFF MSHESLILTK RPWHLFLRGK LFIALSRNAL 600
  601 RAPDQFEIPP NRVIELGTQV EI