YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52841994, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRMLFCHR YFNVFIFVII FAILTQKIRK AETMSISNHH RLIILGSGPA GYTAAVYAAR  60
   61 ANLNPVLITG MQPGGQLTTT TDVDNWPGDI EGLQGPALME RMQKHAERFD TQVIFDHIVK 120
  121 ADLAQAPFTL QGDSTTYTCD ALIIATGASA RYLGLPSETA YQGRGVSACA TCDGFFYRNK 180
  181 SVCVIGGGNT AVEEALYLSN LASSVTLIHR RDSLRAEKIL QDKLFEKAHS GNIKIIWNST 240
  241 LDEVLGDGKK VTGAMIRNLK TGETDQLAMD GIFIAIGHTP NTAIFQDQLA MRDGYILIKS 300
  301 GLDGMATSTS VPGVFACGDV ADHVYRQAIT SAGFGCMAAL DAEKYLDSI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	28	0.85
Non-Cytoplasmic	29	349	0.82