YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52212587, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGYATQLVN FLAAILLLLS FAMLSQRRIL SLIHLYTLQG VALVSANLIL GFVTADTHLY  60
   61 VSAALTLLLK VGLIPWILHR LVQRLNVKAD VEPLLNIPTT LVAGIALVIV AFNVAAPISR 120
  121 LAESAARGTL GIALACVLLS FMMMITRAKA IPQVIGFLSM ENGLFFAAAA ATNGMPMIVE 180
  181 LGIGLDVLVG ILILGVFMFQ IREQFDSLDI HHLEKLKDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	25	0.90
Cytoplasmic	26	31	0.87
Transmembrane Helix	32	53	0.89
Non-Cytoplasmic	54	58	0.77
Transmembrane Helix	59	79	0.91
Cytoplasmic	80	93	0.89
Transmembrane Helix	94	116	0.90
Non-Cytoplasmic	117	124	0.78
Transmembrane Helix	125	145	0.93
Cytoplasmic	146	153	0.76
Transmembrane Helix	154	172	0.91
Non-Cytoplasmic	173	180	0.65
Transmembrane Helix	181	201	0.91
Cytoplasmic	202	219	0.94