YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34538647
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNISEDVN GVLFESDAAT PDLALARPPV QKADNKPKQL VWRNIILFAY LHLAALYGGY  60
   61 LFLFSAKWQT DIFAYILYVI SGLGITAGAH RLWAHKSYKA KWPLKVILII FNTVAFQDAA 120
  121 MDWARDHRMH HKYSETDADP HNATRGFFFS HIGWLLVRKH PDLKEKGKGL DMSDLLADPV 180
  181 LRFQKKYYLL LMPLACFVMP TMIPVYLWGE TWTNAFFVAA MFRYAFNLNV TWLVNSAAHK 240
  241 WGDKPYDKSI KPSENMSVAM FALGEGFHNY HHTFPWDYKT AELGNNKLNF TTAFINFFAK 300
  301 IGWAYDMKTV SEDIVKNRVK RTGDGSHHLW GWGDENQPKE EIEAATRINP KDD

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	64	0.93
Non-Cytoplasmic	65	71	0.87
Transmembrane Helix	72	94	0.92
Cytoplasmic	95	186	0.86
Transmembrane Helix	187	208	0.92
Non-Cytoplasmic	209	214	0.82
Transmembrane Helix	215	234	0.81
Cytoplasmic	235	353	0.87