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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|53805208, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPSPAAAG TISHPSPAGG RGAGVRAAFQ PDLFSAPFEN LPLREAIAFY KHERDWANRL  60
   61 IAGDSLLVMN SLIQKESMAG QVQMIYIDPP YGIKYGSNFQ PFVNKRDVKD RRDEDLTQEP 120
  121 EMIKAFRDTW ELGIHSYLTY LRDRLLLARE LLSESGSVFV QISDENLHHV REVMDEIFGS 180
  181 ENFIAQITFS KTSGATNLFL PGTADYLLWY GKSKEQTKYR SLYKDKTAGA EGGLAYGKVE 240
  241 FEDGRRRAMT ASEKNDPSIV GIYGKVYRID NLTSQSEGRQ KGEGAACWFP VKFAGKDYLP 300
  301 SIKGRWKTNE FGMTRLLLAN RLEATDAGGL YYVRYLDDFP AFPITNNWTD TGLAGFASDK 360
  361 RYVVETSAKV IERCLLMTTD PGDLVLDPTC GSGTTAFVAE KWGRRWITCD TSRVAVTLAK 420
  421 QRLLTASYDY YELKYPHEGL KGGFIYKTVP HVTLKSIANN PEIDEIYERM HPAIERALAE 480
  481 LNAALQSPSP PAPLPPAGEG KTAEASLPPA GKGETAKASL PSAAEGGTAP PSTGEGETAL 540
  541 PPTGEWRTTP PSAGEGRTAK ASLASRGEGS ESPSPAGGRA VASAVTETAG RKVWNESTSL 600
  601 PSPAGGRGAG GEGAEWDYIP HPPARLPEDL KRHARAMRKT ATDAENLMWR LLRNRRLANA 660
  661 KFRRQHPIGE YIADFYCEEH GLVVELDGGQ HAEQKTYDER RTAFLQSQGL TVLRFWNHQV 720
  721 LGETEAVLQV IWEHVARNDT LTPSPSPAYG RGENETPSPV GGGGENESPS PAGGRRVWDE 780
  781 GVSNPPATGD SLAPTPLPPT GEGLKEWEVP FDFPPGWPAS ARAPFDAFHA ARQAMQRQMD 840
  841 ASIAAHADQE TLYDQPLVSK TKLRITGPFT VEAVPFPTVL ALEPSPQPLF QGERDVGFVA 900
  901 DTAVARSGET SRQARWRDEL LKTGIRGKGG QILKLADLEP LPGARYVHAV GTVAEESFPS 960
  961 PQPLSRLRER GLDRVAVSFG PEHAALEQRQ VEIAMREAGE LFPLPKMLVF CAFTFDPEAA1020
 1021 KDIDNIKGIT ALKVQMNTDL LTEDLKKARA SNESFWLMGQ PDVEVRRIPS PQPSPGGRGS1080
 1081 DWYQVEVHGF DYFDTVTGEL KSGGKKQIAL WLLDTDYDNR SLFPRQVFFP MAGAKDGWYK1140
 1141 LKKDIRAELD EDLLEQFHGT VSLPFEAGEN RCIAVKIVDD RGIESLKVMA LD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle