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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|53757982, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.30
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEVKGASL DAKRLAVLQP FRRPLPWSVV VALTLVTTLV GGLQFYLSQV RHLREHAGDT  60
   61 LAAVVQAKFQ HVAHWRAERL ADAEQVAGNA PFLAAAAAWL VAGQQDAAST QRMLAQMQSC 120
  121 REMGRYRNVL LLDVAGRIRL SLVPHTGDEA GGIYERAPLP VAGEGLQPLL GDWYLSQDET 180
  181 ELRVDVSFPL VVYEANGERR FVGALVTVAE AGDLLRTVLE SLSQVKPEIS LIGQRGNRLV 240
  241 SLNRDFLERG GEPSPPPKPL AEAALRVVYG ERGMVMQEGD AGADLLSLGA PIPGSAWYVM 300
  301 AATSATQLPQ ENQSFLLGAS LLGLLGALAA AVALLARSSE RHHMQAALEA EKERADLSRR 360
  361 FEYFVRYAND AILLADRDHR IVDVNDRALD LYGYSREELA GMTLADVVAG DVEGVEHGRL 420
  421 DEALARGGGV WESVHTRKDG VPVPVELSVR SISVEGSDFV QAIVRDVTER KRIELALARQ 480
  481 KNLYSLLAQT NQIIVRHTSE QELFDSVCRI AIRNGGFLFA WIGMIENETG DLVPVARYGD 540
  541 DAGYVGRLHL SRADTAHHHG PTRMAVAAGH HVISDDFLAD PLTRPWHEAG LAAGVRASGA 600
  601 FPIRRFGKVV GAINLYAGER GFFSEDIVAV LDTMAMDVSF ALDILARDAE RERSEMRLRE 660
  661 SEERFRLAAN SAPVLIWMGD TARGCTFFND MWLNFTGRSL EYELGDGWLE GMHPEDRSRW 720
  721 ICAYSAAFDA RKPFEIEYRL RRRDGEYRTI LGKATPRFDA GGEFIGYIGS CIDISDRKKG 780
  781 DESLLLAGKV FEAVRESIIV TDANRVIVAV NPAFSDMTGY SPEEAVGRTP AFLQSGRHGK 840
  841 EYYAAMWRAV DQEGSWQGEF WNRRKNGELF AVLETIVTVR DETGAMVNYI GVAADISSLK 900
  901 EAEEHIHHLA YYDPLSALPN RRYLMERAEY ALALAERRKE ELAVVFLDVD HFKDVNDSLG 960
  961 HQVGDELLVR VATQIKEFTR ETDTVARLGG DEFALLLPDL GRDAVSQVAD KILAALRKPF1020
 1021 EHSGQTFAVT GSIGISLYPH DGTDFETLLR NADTAMYHAK QQGRNQFRFY DPGMNVDILA1080
 1081 RLTVLSELRE AIPAGELRTF FQPEIDLANG TLVGAEALVR WQHPTRGLLS PDQFIPVAES1140
 1141 NDLIIAISDW VLEDTCRHLA QWKKADQAPI TVGVNLAARH FRDPRLVPRV KSLLCRYGVP1200
 1201 GSSLQLELTE STLLDADAQT MIVLQELIAL GCSLSIDDFG TGYSSLSYLK NLPIATLKID1260
 1261 QSFVRDIAFD ADDRTISGTV VALGHSLGLK VIAEGVETEE QRRILLEQGC DFGQGYLFSR1320
 1321 PLSSKEFIKW RMEHALRLET DPRHRD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle