YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52307923, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLTYPVPF HTPDLVWDSS IAIYLFLLGI SSGAVQLAIA YRRSHKLEKP SENWIVRSAA  60
   61 VLGTIPTLIG LTLLIFHLAR PWTFWKLMFN YQFNSVMSMG VMLFQVYMLF MVIWIAVLFK 120
  121 AEIDNLIKKF VPKLRFVTNI IGACERIFSA AEVILFILAA VLGAYTGFLL SALISYPMLN 180
  181 NPVLPALFLA SGTSSGIAAT FLCILIAGKL KGDSHEVHYI HKFEVPIMVT ELGLIVCFFV 240
  241 GLYFGGGQKV VALQNALSGF WGAVFWIGVM LIGIMIPLIA NLFASDKWKY NAKFIILVSI 300
  301 FDLIGVLCLR YFILYAGQLT IAM

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	40	0.97
Cytoplasmic	41	54	0.91
Transmembrane Helix	55	79	0.87
Non-Cytoplasmic	80	96	0.92
Transmembrane Helix	97	119	0.89
Cytoplasmic	120	152	0.90
Transmembrane Helix	153	174	0.89
Non-Cytoplasmic	175	185	0.76
Transmembrane Helix	186	207	0.95
Cytoplasmic	208	224	0.91
Transmembrane Helix	225	246	0.90
Non-Cytoplasmic	247	261	0.85
Transmembrane Helix	262	284	0.91
Cytoplasmic	285	293	0.88
Transmembrane Helix	294	314	0.96
Non-Cytoplasmic	315	323	0.89