YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52425278, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.92
Transmembrane Helix	6	25	0.93
Cytoplasmic	26	31	0.95
Transmembrane Helix	32	51	0.94
Non-Cytoplasmic	52	57	0.77
Transmembrane Helix	58	76	0.95
Cytoplasmic	77	86	0.92
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	140	0.93
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	176	0.91
Transmembrane Helix	177	195	0.92
Non-Cytoplasmic	196	200	0.81
Transmembrane Helix	201	220	0.90
Cytoplasmic	221	228	0.71
Transmembrane Helix	229	248	0.85
Non-Cytoplasmic	249	252	0.78
Transmembrane Helix	253	273	0.91
Cytoplasmic	274	475	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVGFVQAAY IVAAILFIMS LAGLSKHETA KAGCWYGIVG MTIALIATIF GPATEGQLWI  60
   61 LVAMAIGAVL GIRKALKVEM TEMPELVAIL HSFVGLAAVL VGFNSFGLHS AVAMPVNLDE 120
  121 AAQAAFLAEQ AALDNIHNVE VFLGIFIGAV TFTGSVVAFG KLSGKINSKA LMLPHRHKLN 180
  181 LAALVVSALL MISFLNSPEN IFPVLLMTAI ALAFGWHLVA SIGGADMPVV VSMLNSYSGW 240
  241 AAAAAGFMLN NDLLIVTGAL VGSSGAILSY IMCKAMNRSF VSVIAGGFGN DPVVSSDEEQ 300
  301 GEHRETTAEE TAELLKNASS VIITPGYGMA VAQAQYPVAE LTQKLRDRGV NVRFGIHPVA 360
  361 GRLPGHMNVL LAEAKVPYDV VLEMDEINDD FEDTDVVLVI GANDTVNPAA MEDPNSPIAG 420
  421 MPVLEVWKAQ NVIVFKRSMA VGYAGVQNPL FFKENTQMLF GDAKDRVNDI ISALN