YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52424719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSLAVPVF NEEDTIPLFY QKVRNYEELQ AYDVEIVFIN DGSSDKTEEI ITALSAQDPL  60
   61 VQAVQFSRNF GKEPALFAGL EYSTGDVVIP IDVDLQDPIE VIPELIKEHQ KGFDVVLAKR 120
  121 VDRQTDSWFK RKTALWFYKL HNQISKPKIE ENVGDFRLMS RRVVEAIKQL PERQLFMKGI 180
  181 LSWVGFDTAV VEYNRAERVA GTTKFNGWKL WNFALEGITS FSTFPLRLWT YIGLFISACS 240
  241 FLYGSILILG KLIWGNTVPG YPSLMVAILF LGGVQLIGVG VLGEYIGRIY SESKQRPRYI 300
  301 VKTQKGNNNE

Type	Start	End	Confidence
Cytoplasmic	1	227	0.89
Transmembrane Helix	228	250	0.90
Non-Cytoplasmic	251	263	0.71
Transmembrane Helix	264	286	0.90
Cytoplasmic	287	310	0.84