YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52424672, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQVIL VFLVSCVCGA GSILDEFQTH RPLIACTLIG LVLGDMTTGI IVGGSLELLA  60
   61 LGWMNIGAAL APDAALASVI STILVIVGGQ DISTGIAVAI PLAAAGQVLT YVVRAITVGF 120
  121 QHAADKSVED GNLARLDWIH FGALMLQAMR IAIPALIVAL TAGTDVVQTM LNAIPPVVTT 180
  181 GLKIAGGFIA VVGYAMVINM MRAGHLMPFF YAGFVIAAFT DFNLVALGVL GTIMAVIYIQ 240
  241 IHPKYNKSQQ VVVAAASNND LDNRLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.44
Transmembrane Helix	6	24	0.89
Cytoplasmic	25	32	0.43
Transmembrane Helix	33	56	0.85
Non-Cytoplasmic	57	65	0.38
Transmembrane Helix	66	88	0.84
Cytoplasmic	89	93	0.41
Transmembrane Helix	94	118	0.76
Non-Cytoplasmic	119	140	0.50
Transmembrane Helix	141	167	0.74
Cytoplasmic	168	178	0.41
Transmembrane Helix	179	198	0.91
Non-Cytoplasmic	199	208	0.40
Transmembrane Helix	209	239	0.78
Cytoplasmic	240	266	0.54