YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_MANSM
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRRSLLVL ALLFISFLVY EQWQMDYNTP KPVATEQAQA VSSNAEMPAS TSSTEGTVDN  60
   61 VAQGKIISIQ NDVFTLKVDT LGGDVVESSL TNYAAELNSD ARFILLQNKP NEVYVAQSGL 120
  121 IGKNGIDTKA GRAAYQVEAE QFTLADGQNE LRVPLTLEKD GVIYRKVFVI KAGSYDIEVN 180
  181 YEIQNQTNEA IEVQPYGQLK HTLVQSSGSM AMPTYTGGAY SSADTNYKKY SFDEMKDKNL 240
  241 SIDTKAGWVA VLQHYFVSAW IPNQDADNQL YTSTANGLGF IGYRGPVVNV PAGGSETIKS 300
  301 ALWTGPKLQN EMGAVANHLD LTVDYGWAWF IAKPLFWLLN VIQSIVSNWG LAIIGVTIVV 360
  361 KGILYPLTKA QYTSMAKMRM LQPKLQEMRE RFGDDRQRMS QEMMKLYKEE KVNPLGGCLP 420
  421 LLIQMPIFIA LYWTFMEAVE LRHAPFFGWI QDLSAQDPYY ILPILMGASM FLLQKMSPTP 480
  481 VADPMQQKIM NFMPLIFMVF FLWFPAGLVL YWLVSNIITI VQQQLIYRGL EKKGLHSRKK 540
  541

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	344	0.99
Transmembrane Helix	345	365	0.90
Cytoplasmic	366	412	0.94
Transmembrane Helix	413	435	0.91
Non-Cytoplasmic	436	455	0.92
Transmembrane Helix	456	474	0.89
Cytoplasmic	475	491	0.83
Transmembrane Helix	492	514	0.90
Non-Cytoplasmic	515	540	0.90