YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52424466, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	48	0.76
Transmembrane Helix	49	70	0.88
Cytoplasmic	71	79	0.74
Transmembrane Helix	80	104	0.85
Non-Cytoplasmic	105	133	0.85
Transmembrane Helix	134	152	0.92
Cytoplasmic	153	160	0.63
Transmembrane Helix	161	182	0.77
Non-Cytoplasmic	183	213	0.77
Transmembrane Helix	214	235	0.87
Cytoplasmic	236	242	0.79
Transmembrane Helix	243	261	0.87
Non-Cytoplasmic	262	269	0.66
Transmembrane Helix	270	292	0.92
Cytoplasmic	293	312	0.79
Transmembrane Helix	313	335	0.92
Non-Cytoplasmic	336	623	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSANAKVKI QSFGRFLSNM VMPNIGAFIA WGFITALFIP TGWFPNEMLA KLVGPMITFL  60
   61 LPLLIGYTGG KLVGGDRGAV VGAITTAGVI VGTDIPMFLG AMIAGPTGGW AIKSFDKWAD 120
  121 GKIKSGFEML VNNFSSGIIG MILAILFFWV VGPAVKIISD WLAAGVDVLV NAGLLPLTSI 180
  181 FVEPAKILFL NNAINHGIFS PLGIQQSQEF GQSVFFLIEA NPGPGLGVLL AYMIFGKGSA 240
  241 KQTSGGAAII HFFGGIHEIY FPYVLMNPRL ILAVIAGGAT GVFTLVLFNA GLQAPASPGS 300
  301 IIAVLAMTPK TSFLGVITSV IAACAVSFVV ASFFVKLQKE DESGKLEEAQ AASKAMKSNT 360
  361 SQQVTNYDGL KKIFVSCDAG MGSSAMGASM LRKKINDAGL PIEVANCAIN DLPEDARLVI 420
  421 THQDLTLRAK KQVPNAMHFS LTNFLDNKFY DSLVNDLKAN FDEKAPVAQA KEGEIEVNGT 480
  481 TFSLQPEQIF LGLKANDKFA AIRFAGEQLV KAGFVQPSYV DAMFEREKLV STYLGEGVAV 540
  541 PHGTIEAKDA VLKTGVVVCQ YPEGVRFTDE EDGVAKLVIG IAARNNEHIQ VVSAITNALD 600
  601 SDEAIELLTS TNDVNKVLEL LKA