YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52424408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.90
Transmembrane Helix	14	37	0.86
Cytoplasmic	38	63	0.87
Transmembrane Helix	64	88	0.80
Non-Cytoplasmic	89	95	0.65
Transmembrane Helix	96	114	0.85
Cytoplasmic	115	144	0.89
Transmembrane Helix	145	165	0.89
Non-Cytoplasmic	166	178	0.79
Transmembrane Helix	179	202	0.88
Cytoplasmic	203	210	0.80
Transmembrane Helix	211	230	0.96
Non-Cytoplasmic	231	239	0.80
Transmembrane Helix	240	262	0.73
Cytoplasmic	263	305	0.84
Transmembrane Helix	306	327	0.92
Non-Cytoplasmic	328	349	0.91
Transmembrane Helix	350	373	0.92
Cytoplasmic	374	388	0.92
Transmembrane Helix	389	409	0.89
Non-Cytoplasmic	410	417	0.59
Transmembrane Helix	418	436	0.87
Cytoplasmic	437	463	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLETILSSI DSFIWGPPLL ILLSGTGLYL TLRLGFLQIR HLPRAFAYMF KKEEGNHQRG  60
   61 DVSAFQALCT ALSATIGTGN IVGVATAIQA GGPGAMFWMW LVALLGMSTK YAECLLAVKY 120
  121 RVRDKNGFMA GGPMYYIERG LGIKWLAKLF AVFGVLVAFF GIGTFPQINA ITHAMNDTFS 180
  181 VPVTISAAII TILVAAIILG GVKRIAAVSS YIVPFMAVLY VTTSLIILLI NADKVPSALA 240
  241 LIIESAFNPE AALGGALGFT VMKAIQSGVA RGIFSNESGL GSAPIAAAAA HTKEPVRQGL 300
  301 ISMTGTFLDT IIVCSMTGLV LVITGAWQSS DMAGAAVTNY AFSQGLGTNI GATIVTVGLL 360
  361 FFAFTTILGW CYYGERCFVY LVGIKGIKLY RTAFIILVAC GAFIKLDLIW ILADIVNGLM 420
  421 AFPNLIALIG LRKVIVSETK DYFMRLKTNN YSLDDNEEQI VNS