YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23009168
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.52
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	68	0.60
Transmembrane Helix	69	89	0.86
Cytoplasmic	90	96	0.53
Transmembrane Helix	97	121	0.89
Non-Cytoplasmic	122	141	0.61
Transmembrane Helix	142	162	0.79
Cytoplasmic	163	173	0.69
Transmembrane Helix	174	196	0.80
Non-Cytoplasmic	197	202	0.69
Transmembrane Helix	203	222	0.89
Cytoplasmic	223	231	0.80
Transmembrane Helix	232	254	0.91
Non-Cytoplasmic	255	288	0.84
Transmembrane Helix	289	310	0.92
Cytoplasmic	311	319	0.86
Transmembrane Helix	320	340	0.86
Non-Cytoplasmic	341	346	0.78
Transmembrane Helix	347	370	0.90
Cytoplasmic	371	371	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSLTLILF AQLLGEVVAR AAGLPVPGPV IGMALLLGFL VLRDRTAPAS TRWLPPPLVD  60
   61 GGMEGVAKGL LAHLSIMFVP AGVGIVGKLD VLASHGLALA VVLCLSVTLT LAATVLTFVA 120
  121 VSRLLERSRR GPDMSGEFAL WVYLTRTPLL WLTVTLLAYA VADRLFQAAG RHPIVNPVIH 180
  181 AIWMIGLVLT LTGTPYPTYF QGAQFVHFLL GPATVALAVP LYERRATVMR ALLPMLAALV 240
  241 VGCITAMTSA LVFAKLAGIP ADVRLAMAPK SVTTGVAMGI VEALGGDPTL AAVLVMLTGM 300
  301 AGAVIVTPLM RTLRIEDMRA RGFAAGLAAH GLGTARAFQV SEVAGTFAGI AMGLNAFLTA 360
  361 ILVPVAVSFL R