YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1054843, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMSAP NGETEVKRNP LQKVPTSKPP FTVGDIKKAI PPHCFQRSLI RSFSYVVYDL  60
   61 ILVSIMYYVA NTYFHLLPSP YCYIAWPIYW ICQGCVCTGI WVNAHECGHH AFSDYQWVDD 120
  121 TVGLILHSAL LVPYFSWKYS HRRHHSNTGS LERDEVFVPK PKSQLGWYSK YLNNPPGRVL 180
  181 SLTITLTLGW PLYLAFNVSG RPYDRFACHY DPYGPIYNNR ERLQIFISDA GVLGVCYLLY 240
  241 RIALVKGLAW LVCVYGVPLL VVNGFLVLIT YLQHTHPSLP HYDSTEWDWL RGALATCDRD 300
  301 YGVLNKVFHN ITDTHVVHHL FSTMPHYNAM EATKAVKPLL GDYYQFDGTP IYKEMWREAK 360
  361 ECLYVEKDES SQGKGVFWYK NKL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.88
Transmembrane Helix	55	76	0.83
Non-Cytoplasmic	77	82	0.77
Transmembrane Helix	83	104	0.66
Cytoplasmic	105	176	0.61
Transmembrane Helix	177	196	0.76
Non-Cytoplasmic	197	222	0.61
Transmembrane Helix	223	242	0.73
Cytoplasmic	243	247	0.63
Transmembrane Helix	248	272	0.87
Non-Cytoplasmic	273	383	0.76