YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23016322
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.87
Transmembrane Helix	14	35	0.82
Non-Cytoplasmic	36	53	0.92
Transmembrane Helix	54	76	0.93
Cytoplasmic	77	105	0.95
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	144	0.80
Transmembrane Helix	145	164	0.94
Cytoplasmic	165	174	0.75
Transmembrane Helix	175	198	0.84
Non-Cytoplasmic	199	214	0.80
Transmembrane Helix	215	239	0.84
Cytoplasmic	240	249	0.84
Transmembrane Helix	250	273	0.84
Non-Cytoplasmic	274	291	0.93
Transmembrane Helix	292	316	0.86
Cytoplasmic	317	343	0.94
Transmembrane Helix	344	364	0.90
Non-Cytoplasmic	365	370	0.81
Transmembrane Helix	371	392	0.95
Cytoplasmic	393	400	0.82
Transmembrane Helix	401	421	0.94
Non-Cytoplasmic	422	428	0.81
Transmembrane Helix	429	447	0.96
Cytoplasmic	448	630	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPAAEKTD LKRLGTLALA AIGVVYGDIG TSPLYTLKEC FDPDHGIPST PENIFGIASL  60
   61 VFWAIILVVT FKYVLFVMRA DNRGEGGILA LLALTIRATG GDRGKVGTLV GLGLFGAALF 120
  121 IGDGMITPAI SVLSAIEGLE VGTPFFTPYV VPLTLIVLIA LFAIQSHGTE LVGRLFGPVM 180
  181 VVWFVTIASL GLIEVVGHPA ILTAINPAYG VTFLFTHGWI AFVVMGSVVL AVTGGEALYA 240
  241 DMGHFGKFPI QLAWFTLVLP ALTLSYFGQS ALILDNPEAA KNPFYMLVPG WGLYPMVILS 300
  301 TMATVIASQA VISGVFSLSR QAVQLGYSPR LDIRHTSDEE EGQIYIPRAN WGLLLGIVAL 360
  361 VVGFKSSTNL AAAYGIAVTG TMGATTILAL VVARHQWKWP LWLCLTLGAV FLTVDLGFLG 420
  421 ANLLKVTQGG WFPLAVGFGM LLLMATWRKG RDILTRRLAD GALPLDMFMA QQKDSTSILR 480
  481 VRGTAVFMTG GTDTVPIALL HNLKHNKVLH QRIVFLTVVT EDIPRVPARD RVVVEGLAEG 540
  541 FYRITVRYGF FQEPDIPKVL RLCKAFGLEF EMMDTSFFLG RETLVPSTHP EMPEWRERLF 600
  601 VIMSRNAVSA TDFFHIPAGR VVELGIQVQL