YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116630280, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	313	0.64
Transmembrane Helix	314	335	0.88
Non-Cytoplasmic	336	346	0.54
Transmembrane Helix	347	370	0.89
Cytoplasmic	371	376	0.54
Transmembrane Helix	377	399	0.76
Non-Cytoplasmic	400	406	0.61
Transmembrane Helix	407	429	0.89
Cytoplasmic	430	446	0.68
Transmembrane Helix	447	467	0.93
Non-Cytoplasmic	468	478	0.54
Transmembrane Helix	479	508	0.71
Cytoplasmic	509	526	0.37
Transmembrane Helix	527	554	0.79
Non-Cytoplasmic	555	565	0.38
Transmembrane Helix	566	586	0.68
Cytoplasmic	587	591	0.55
Transmembrane Helix	592	614	0.85
Non-Cytoplasmic	615	629	0.63
Transmembrane Helix	630	651	0.93
Cytoplasmic	652	661	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEDLLSPD LMIMDLKATT QEEAIKEMAD LEVKQDVVNN EDEFIKSIWA REKESTTGIG  60
   61 DGIAMPHARN KYINRAAVLF AKSPKGIDYN SLDGQPVHLF FMITAPAGAD NTHLQALAKL 120
  121 SSLLINPDVV SALKAATKPE EVIDIFKKAE AKKDAQDKAD AEKRKAEAAK EAAKPASEQK 180
  181 PLIVGVTACI NGIAHTYMAQ EALIKAGKKL GVDVRIETNG SEGVKDRLTP EEIKRAKGVV 240
  241 IASDKKVEMP RFDGKELVMK PVVDGINHPQ ELIEDILENK APIYHADSSA SANDDSAKEK 300
  301 QGLWASIYKN LMSGISHMLP FVIGGGILMA ISFIVENYMA GGAKNPAFIF LNSAGNLAFA 360
  361 FMVPVLAAYI AESIGDLPAL MPGFVGGYMA AIVNGTNGLQ VNVQAHAVSP AGFLGGIAAG 420
  421 FIAGYMMIGL KKLFAKLPKS VEGMKPMLIY PILGLLFIAL IMFYIINPIF SSINFAITHF 480
  481 LNSMGTGNLV ILTLILAGMM AIDMGGPFNK AAYVFASGAF ANDPHSATAA VMMAAVMVGG 540
  541 MVPPFATAIG TTFFKNRYTK EERRAGVSNW ILGFSFITEG AIPFAAADPG RVIPSCVIGS 600
  601 AVGGLLVGLW HIQVPAPHGG LWVSPLSNHI LLYFVATIIG SIVAGLIMSF WKKPVSKYPD 660
  661 E