YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116095557, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEKHHQKN NFFVKWFLNN RFSIVLLNIL LFFLIIWVFN QISFVLNPFW TFFNAILPPI  60
   61 LVASIQYYLM DPVVDWMEKK LKVPRIITII LLFVIVLGGL IWIINTLIPI IQHQTDSLIK 120
  121 NWPAYWQDAQ KGFEKMIRDP RLNGVRGGIN QAVSDAQTKM FKTGQDSFNL ALSNLSSAVN 180
  181 VITMIFMTLL TAPFVLFFML KDGHRLNPYV TKFAPQRLQP SFSSLLSDIN GAVASYIRGQ 240
  241 ITVAFWVGVM FAIGYSVIGL NYGITLAVLA GVLNMIPYFG TFIAFIPAII LGLISSPMML 300
  301 VKVLIVFAIE QTLEGRVISP LVMGNKMNMN PVTTILLLIG ASAVAGLWGV IFAIPVYAVI 360
  361 KIIVTRLFNY YRKISTLYDE ISGSDDANLK SKE

Type	Start	End	Confidence
Cytoplasmic	1	16	0.98
Transmembrane Helix	17	39	0.87
Non-Cytoplasmic	40	48	0.78
Transmembrane Helix	49	70	0.91
Cytoplasmic	71	85	0.90
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	177	0.96
Transmembrane Helix	178	200	0.90
Cytoplasmic	201	241	0.81
Transmembrane Helix	242	266	0.81
Non-Cytoplasmic	267	274	0.46
Transmembrane Helix	275	306	0.72
Cytoplasmic	307	331	0.45
Transmembrane Helix	332	359	0.83
Non-Cytoplasmic	360	393	0.41