YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71898255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLNEERLW VWCTSFLDFA ARVSGTSYHA SSVRLGTVDG RTALIFATRT AVNASRAGNT  60
   61 SPPLTSFLWE GTDKRGVKIK GEQTARTANL LRAELRRQGI TPLVVKPRPK PLFGQAGKRI 120
  121 TPKDIAFFSR QMATMMKAGV PIVGALDILA NGQKNPRMRT MVNQIKNDIE GGSSLYESIS 180
  181 KHPVYFDELY RNLVRAGERA GVLETVLDTI ASYKENIEAL KGKIRKALFY PVAIVAVALI 240
  241 VSSILLIYVV PQFEDVFKGF GAELPAFTQM IVNFSNFMQR WWWAMLALLI VVIGGGLFTY 300
  301 KRSESMQHLL DRLVLKFPVI GAIMHNSALA RFSRTTAVTF RAGVPLVEAL GIVAGATGNK 360
  361 VYSDAVFRMR DDVSVGYSIN MSMRQVGIFP HMVVQMASIG EEAGALDAML FKVAEYYEQE 420
  421 VSNAVDGLSS LLEPLIMVFI GVIVGGMVIA MYLPIFKLAS VVG

Type	Start	End	Confidence
Cytoplasmic	1	227	0.93
Transmembrane Helix	228	250	0.94
Non-Cytoplasmic	251	280	0.95
Transmembrane Helix	281	300	0.96
Cytoplasmic	301	312	0.90
Transmembrane Helix	313	332	0.51
Non-Cytoplasmic	333	337	0.47
Transmembrane Helix	338	359	0.56
Cytoplasmic	360	385	0.58
Transmembrane Helix	386	400	0.27
Non-Cytoplasmic	401	434	0.55
Transmembrane Helix	435	456	0.93
Cytoplasmic	457	463	0.55