YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34538175, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTVDSWLC SSPGMHFITN DSDQVSQNFS GVSNVTSCPM DEKLLSTVLT TFYSVIFIVG  60
   61 LVGNIIALYV FLGIHRKRNS IQIYLLNVAV ADLLLIFCLP FRIMYHINQN RWTLGVILCK 120
  121 VVGTLFYMNM YISIILLGFI SLDRYIKINR SIQQRRAITT KQSVYVCCVV WTVALAGFLT 180
  181 MIILTLKKGG HNSTMCFHYR DKHNAKGEAI FNFALVVMFW LIFLLIILSY IKIGKNLLRI 240
  241 SKRRSKFPNS GKYATTARNS FIVLIIFTIC FVPYHAFRFI YISSQLNASS CYWKEIIHKT 300
  301 NEIMLVLSSF NSCLDPVMYF LMSSNIRKIM CQLLFRRFQS DTSRSESTSE FKPGYSLHDL 360
  361 SVTVKMQYST KGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.98
Transmembrane Helix	50	73	0.90
Cytoplasmic	74	82	0.89
Transmembrane Helix	83	104	0.95
Non-Cytoplasmic	105	122	0.84
Transmembrane Helix	123	142	0.93
Cytoplasmic	143	162	0.89
Transmembrane Helix	163	185	0.94
Non-Cytoplasmic	186	212	0.93
Transmembrane Helix	213	234	0.93
Cytoplasmic	235	254	0.96
Transmembrane Helix	255	277	0.92
Non-Cytoplasmic	278	373	0.71