YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46192182, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISPAKAAA PDKARRPRRF VFLLLDRFTM ISFAGAIEPL RIANRVAGRP LYAWALAGEN  60
   61 GTEAVCSNGA AFRLDMGLEE IDREDVLLVC GGIDVQKATT RPVVNWLRRE ARRGVTIGGL 120
  121 CTGAYALAKA GLLDGKKATI HWENQDGFTE EFEEVRLTKS VFVMDGNRLT TAGGTASIDM 180
  181 MLKIIARDQG DDIANTVADQ LIYSSIRTDQ DTQRLSIPTR IGVRHPKLSE VIRKMEANIE 240
  241 DPISPADLAE EVGMSTRQLE RLFRRYLNRS PKRYYMELRL QKARNLLMQT DMSVINVALA 300
  301 CGFASPSHFS KCYRAHYATT PYRERGTQSA PGAVEEE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.48
Transmembrane Helix	20	37	0.44
Non-Cytoplasmic	38	337	0.95